Function reference • cerebroApp

Main functions Main functions of cerebroApp
`exportFromSeurat()`	Export Seurat object to Cerebro.
`exportFromSCE()`	Export SingleCellExperiment (SCE) object to Cerebro.
`launchCerebro()`	Launch Cerebro interface.
Data pre-processing These functions can be used to perform optional data pre-processing to provide more results in the Cerebro interface.
`addPercentMtRibo()`	Add percentage of mitochondrial and ribosomal transcripts.
`getMostExpressedGenes()`	Get most expressed genes for specified grouping variables in Seurat object.
`getMarkerGenes()`	Get marker genes for specified grouping variables in Seurat object.
`getEnrichedPathways()`	Get enriched pathways based on marker genes from EnrichR.
`performGeneSetEnrichmentAnalysis()`	Perform gene set enrichment analysis with GSVA.
`extractMonocleTrajectory()`	Extract trajectory from Monocle and add to Seurat object.
Internal and utility functions These functions are either used inside other functions.
`calculatePercentGenes()`	Calculate percentage of transcripts of gene list.
`launchCerebroV1.0()`	Launch Cerebro v1.0
`launchCerebroV1.1()`	Launch Cerebro v1.1
`launchCerebroV1.2()`	Launch Cerebro v1.2
`launchCerebroV1.3()`	Launch Cerebro v1.3
`.read_GMT_file()`	Read GMT file.
`.send_enrichr_query()`	Gene enrichment using Enrichr.
Classes These classes are used by Cerebro to store data.
`Cerebro_v1.3`	R6 class in which data sets will be stored for visualization in Cerebro.

Reference