Roman Hillje

Bioinformatics Developer at PipeBio

About me

Expertise & Interests

  • Full stack development
  • Web applications built with React and Angular
  • APIs written in NestJS, Python and Scala (REST, GraphQL)
  • Deployment to cloud infrastructure (AWS, GCP)
  • Bioinformatics and data wrangling with R and Python
  • Containerized data processing workflows with Snakemake and Nextflow
  • Interactive apps for data visualization with Shiny

Education

Other Activities

Selected Publications

  • Time makes histone H3 modifications drift in mouse liver
    R Hillje, et al., Aging (2022) Article
  • XenoCell: classification of cellular barcodes in single cell experiments from xenograft samples
    S Cheloni, R Hillje, et al., BMC Medical Genomics (2021) Article | GitLab
  • Cerebro: Interactive visualization of scRNA-seq data
    R Hillje, et al., Bioinformatics (2019) Article | GitHub (Cerebro) | GitHub (cerebroApp)
  • Tightly regulated 'all-in'one' lentiviral vector for protection of human hematopoietic cells from anticancer chemotherapy
    N Lachmann, S Brennig, et al., Gene Therapy (2015) Article